Software: 3C-MTS/Capture-C analysis using 3C-analyzer

Abstract: The module of 'Many-to-all' in 3C-analyzer can be used for 3C-MTS/Capture-C data analysis.

software: 4C-seq analysis using 3C-analyzer

Abstract: The pipeline of 'One-to-All' in 3C-analyzer is used for 4C-seq data analysis.

Software: 3C-analyzer--A New Computational Method for Discovery of Long-range Chromatin Interactions from 3C-seq

Abstract: 3C-analyzer, fulfilled all analytic workflows from raw sequencing data to significance detection of chromatin interactions, and provided a user friendly interface for data management and analysis.